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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 467total RNA-seq
  • 75ChIP-seq
  • 9ATAC-seq
  • 9DNase-seq
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2WGBS
  • 1Hi-C
Assay category
  • 474Transcription
  • 75DNA binding
  • 18DNA accessibility
  • 2DNA methylation
  • 13D chromatin structure
Target of assay
  • 40transcription factor
  • 35histone
  • 35histone modification
  • 18narrow histone mark
  • 16broad histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 450February, 2021
  • 65August, 2017
  • 17July, 2019
  • 15June, 2019
  • 5November, 2020
  • 5October, 2018
  • 3October, 2019
  • 2April, 2018
  • 2August, 2021
  • 2July, 2018
  • 1January, 2018
  • 1May, 2021
  • 1November, 2018
  • 1October, 2017
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 570Homo sapiens
Biosample type
  • 481tissue
  • 57in vitro differentiated cells
  • 32primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 570AMP
Genome assembly (visualization)
  • 567hg19
  • 562GRCh38
Lab
  • 568AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

570 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue381122
bone tissue58
white adipose tissue12
omental fat pad43121
subcutaneous adipose tissue6211
in vitro differentiated cells
adipocyte44731
cardiac fibroblast1
osteoblast1
primary cell
osteoblast511
cardiac fibroblast33
mesenchymal stem cell6
pancreatic stellate cell4
brain pericyte11
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