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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 101ChIP-seq
  • 76total RNA-seq
  • 70single cell RNA-seq
  • 34ATAC-seq
  • 17DNase-seq
  • 2Hi-C
  • 1FAIRE-seq
Assay category
  • 146Transcription
  • 101DNA binding
  • 52DNA accessibility
  • 23D chromatin structure
Target of assay
  • 90histone
  • 90histone modification
  • 48narrow histone mark
  • 42broad histone mark
  • 9transcription factor
  • 8RNA binding protein
  • 2control
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 33April, 2018
  • 33July, 2018
  • 26February, 2021
  • 25October, 2019
  • 18June, 2019
  • 17August, 2017
  • 16December, 2017
  • 12November, 2019
  • 9May, 2021
  • 7August, 2020
  • 7July, 2019
  • 6November, 2017
  • 5December, 2019
  • 5March, 2020
  • 5September, 2017
  • 4May, 2019
  • 3August, 2018
  • 3August, 2021
  • 3September, 2020
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 301Homo sapiens
Biosample type
  • 231primary cell
  • 50cell line
  • 20in vitro differentiated cells
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 287AMP
  • 10HPAP
  • 4T1D
Genome assembly (visualization)
  • 292GRCh38
  • 285hg19
Lab
  • 291AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
Audit category:
  • 57inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

301 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell7101213
pancreatic beta cell7101210
pancreatic ductal cell134104
pancreatic acinar cell84125
endothelial cell of umbilical vein1221
cell line
EndoC_BH113332
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte14
Hepatic endoderm2
pancreatic PP cell2
endothelial cell1
intermediate endothelial cell1
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