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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
Assay category
56
DNA binding
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
32
November, 2017
19
November, 2018
4
December, 2017
1
August, 2021
Available data
57
bam
57
fastq
56
bed narrowPeak
56
bigWig
55
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
56
Homo sapiens
Biosample type
52
cell line
2
in vitro differentiated cells
2
tissue
Organ
56
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
2
kidney
1
artery
1
eye
Project
56
AMP
Genome assembly (visualization)
55
hg19
51
GRCh38
Lab
55
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
limb
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
cell line
HepG2
52
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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