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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
159
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
403
DNA binding
162
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
333
transcription factor
84
histone modification
83
histone
81
recombinant protein
56
RNA binding protein
53
narrow histone mark
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
260
November, 2017
170
May, 2020
52
November, 2018
40
December, 2017
20
May, 2022
15
August, 2021
11
August, 2017
8
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
2
June, 2019
1
March, 2020
Available data
653
bam
593
bigWig
440
fastq
413
bed narrowPeak
337
bigBed narrowPeak
174
tsv
69
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
593
Homo sapiens
Biosample type
323
cell line
253
tissue
10
primary cell
7
in vitro differentiated cells
Organ
592
liver
554
connective tissue
550
pancreas
425
adipose tissue
259
epithelium
167
heart
162
brain
116
kidney
112
vasculature
107
blood vessel
71
artery
58
bone element
57
limb
55
blood
55
bodily fluid
52
musculature of body
25
embryo
18
ureter
15
nerve
12
spleen
8
vein
6
eye
1
pericardium
1
pituitary gland
Project
593
AMP
Genome assembly (visualization)
588
hg19
501
GRCh38
Lab
560
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
593 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
317
5
1
tissue
liver
72
147
20
2
1
right lobe of liver
4
2
1
1
2
pituitary gland
1
primary cell
hepatocyte
2
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
7
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