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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 432ChIP-seq
  • 159total RNA-seq
  • 21ATAC-seq
  • 5DNase-seq
  • 3small RNA-seq
  • 1Hi-C
  • 1WGBS
Assay category
  • 432DNA binding
  • 162Transcription
  • 26DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 333transcription factor
  • 83histone modification
  • 82histone
  • 81recombinant protein
  • 56RNA binding protein
  • 52narrow histone mark
  • 30broad histone mark
  • 23chromatin remodeller
  • 13control
  • 2other context
  • 2other post-translational modification
Date released
  • 268November, 2017
  • 170May, 2020
  • 52November, 2018
  • 50December, 2017
  • 20May, 2022
  • 18August, 2017
  • 17August, 2021
  • 8July, 2019
  • 6October, 2019
  • 5December, 2019
  • 5January, 2019
  • 2June, 2019
  • 1March, 2020
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 622Homo sapiens
Biosample type
  • 332cell line
  • 265tissue
  • 14in vitro differentiated cells
  • 11primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 622AMP
Genome assembly (visualization)
  • 617hg19
  • 528GRCh38
Lab
  • 588AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
Audit category:
  • 27inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

622 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG232651
tissue
liver821472021
right lobe of liver72112
in vitro differentiated cells
hepatocyte14
primary cell
hepatocyte351
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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