Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33DNase-seq
  • 27ChIP-seq
  • 4total RNA-seq
  • 2small RNA-seq
  • 1ATAC-seq
  • 1WGBS
Assay category
  • 34DNA accessibility
  • 27DNA binding
  • 6Transcription
  • 1DNA methylation
Target of assay
  • 27histone
  • 27histone modification
  • 16broad histone mark
  • 11narrow histone mark
Date released
  • 41June, 2019
  • 13August, 2017
  • 6May, 2019
  • 5July, 2019
  • 2March, 2020
  • 1January, 2018
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 68Homo sapiens
Biosample type
  • 57tissue
  • 11primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 68AMP
Genome assembly (visualization)
  • 67hg19
  • 53GRCh38
Lab
  • 68AMP-T2D consortium
Audit category:
  • 8inconsistent ontology term
BIOSAMPLE
ASSAY

68 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg1361
muscle of arm17
skeletal muscle tissue13111
psoas muscle2
forelimb muscle1
primary cell
skeletal muscle satellite cell711
skeletal muscle cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego