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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 324total RNA-seq
  • 161ChIP-seq
  • 80single cell RNA-seq
  • 41ATAC-seq
  • 8DNase-seq
  • 4WGBS
  • 2FAIRE-seq
  • 2small RNA-seq
  • 1Hi-C
Assay category
  • 406Transcription
  • 161DNA binding
  • 51DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 142histone
  • 142histone modification
  • 73broad histone mark
  • 69narrow histone mark
  • 19transcription factor
  • 9RNA binding protein
Date released
  • 159August, 2017
  • 153July, 2018
  • 72September, 2018
  • 43May, 2021
  • 42October, 2018
  • 39April, 2018
  • 31November, 2019
  • 26February, 2021
  • 10March, 2020
  • 8October, 2019
  • 7August, 2020
  • 7November, 2018
  • 5October, 2017
  • 5September, 2017
  • 4July, 2019
  • 4June, 2019
  • 3August, 2018
  • 3September, 2020
  • 1June, 2018
  • 1May, 2019
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 617Homo sapiens
Biosample type
  • 373tissue
  • 192primary cell
  • 56cell line
  • 2in vitro differentiated cells
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 607AMP
  • 10HPAP
  • 6T1D
Genome assembly (visualization)
  • 611GRCh38
  • 607hg19
Lab
  • 612AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 53inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

623 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
Hi-C
tissue
islet of Langerhans260296311
body of pancreas2264422
pancreas113221
endocrine pancreas14
primary cell
pancreatic alpha cell1071213
pancreatic beta cell1071210
pancreatic ductal cell413104
pancreatic acinar cell48125
pancreatic endocrine cell23
cell line
EndoC_BH133132
Panc1611
in vitro differentiated cells
pancreatic PP cell2
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