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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 58total RNA-seq
  • 11DNase-seq
  • 3ATAC-seq
  • 2Hi-C
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 79DNA binding
  • 58Transcription
  • 15DNA accessibility
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 68histone
  • 68histone modification
  • 43broad histone mark
  • 25narrow histone mark
  • 9transcription factor
  • 5RNA binding protein
  • 2control
Date released
  • 56February, 2021
  • 39May, 2019
  • 36October, 2019
  • 10July, 2019
  • 7June, 2019
  • 6November, 2017
  • 1March, 2020
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 155Homo sapiens
Biosample type
  • 70tissue
  • 56cell line
  • 29primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 155AMP
Genome assembly (visualization)
  • 153hg19
  • 148GRCh38
Lab
  • 155AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

155 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial artery1821
ascending aorta1311
thoracic aorta1221
aorta1111
coronary artery321
cell line
smooth muscle cell of the coronary artery452
primary cell
endothelial cell of umbilical vein1221
brain microvascular endothelial cell311
choroid plexus epithelial cell31
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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