Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 68total RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
  • 3single cell RNA-seq
Assay category
  • 1390DNA binding
  • 350DNA accessibility
  • 71Transcription
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 334November, 2017
  • 210June, 2019
  • 195October, 2019
  • 183August, 2017
  • 128May, 2021
  • 117May, 2020
  • 97May, 2019
  • 80November, 2018
  • 72December, 2017
  • 65April, 2019
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 36July, 2019
  • 32August, 2021
  • 30December, 2018
  • 26January, 2019
  • 20May, 2022
  • 16February, 2018
  • 14October, 2017
  • 11November, 2019
  • 8January, 2018
  • 7August, 2020
  • 7February, 2021
  • 7March, 2020
  • 5September, 2017
  • 3February, 2023
  • 3September, 2020
  • 1November, 2020
Available data
  • 2057bam
  • 1838bigWig
  • 1817bed narrowPeak
  • 1042bigBed narrowPeak
  • 992fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1832Homo sapiens
Biosample type
  • 859tissue
  • 423cell line
  • 421primary cell
  • 132in vitro differentiated cells
  • 3stem cell
Organ
  • 465liver
  • 217pancreas
  • 213brain
  • 160epithelium
  • 158heart
  • 123kidney
  • 102connective tissue
  • 99vasculature
  • 94blood vessel
  • 91limb
  • 63musculature of body
  • 55blood
  • 55bodily fluid
  • 33artery
  • 31nerve
  • 28adipose tissue
  • 18ureter
  • 16spleen
  • 15embryo
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 1695AMP
  • 133T1D
  • 10HPAP
Genome assembly (visualization)
  • 1685hg19
  • 1601GRCh38
  • 5hg18
Lab
  • 1581AMP-T2D consortium
  • 167Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 62inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1838 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
single cell RNA-seq
tissue
liver82220
left cardiac atrium401
body of pancreas26442
heart left ventricle29322
islet of Langerhans29131
cell line
HepG232651
GM12878541
EndoC_BH1132
Panc1611
smooth muscle cell of the coronary artery4
primary cell
monocyte8422
CD8-positive, alpha-beta T cell3322
pancreatic endocrine cell23
pancreatic alpha cell713
skeletal muscle myoblast1521
in vitro differentiated cells
adipocyte4713
hepatocyte14
neural progenitor cell13
pancreatic endoderm121
embryonic stem cell26
stem cell
hESC21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego