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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1247ChIP-seq
  • 1136total RNA-seq
  • 184DNase-seq
  • 78ATAC-seq
  • 21single cell RNA-seq
  • 17WGBS
  • 7small RNA-seq
  • 5GRO-seq
  • 5Hi-C
  • 2FAIRE-seq
Assay category
  • 1247DNA binding
  • 1164Transcription
  • 264DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 747histone modification
  • 746histone
  • 475transcription factor
  • 391broad histone mark
  • 354narrow histone mark
  • 103RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 544February, 2021
  • 334November, 2017
  • 241August, 2017
  • 195May, 2021
  • 181June, 2019
  • 174May, 2020
  • 161October, 2019
  • 120July, 2018
  • 97May, 2019
  • 78November, 2018
  • 72September, 2018
  • 70December, 2017
  • 65April, 2019
  • 49July, 2019
  • 46October, 2018
  • 40May, 2024
  • 31November, 2019
  • 30December, 2018
  • 30February, 2018
  • 26January, 2019
  • 22August, 2021
  • 20May, 2022
  • 15March, 2020
  • 13October, 2017
  • 10April, 2018
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3February, 2023
  • 3September, 2020
  • 2June, 2018
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 2696Homo sapiens
Biosample type
  • 1637tissue
  • 522cell line
  • 348primary cell
  • 192in vitro differentiated cells
  • 3stem cell
Organ
  • 612liver
  • 530connective tissue
  • 524pancreas
  • 413adipose tissue
  • 227epithelium
  • 207heart
  • 173brain
  • 153vasculature
  • 148blood vessel
  • 117kidney
  • 91limb
  • 83artery
  • 64musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 27embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 4eye
Project
  • 2618AMP
  • 74T1D
  • 10HPAP
Genome assembly (visualization)
  • 2560hg19
  • 2522GRCh38
  • 5hg18
Lab
  • 2509AMP-T2D consortium
  • 106Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 156inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 72missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2702 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
GRO-seq
Hi-C
FAIRE-seq
tissue
adipose tissue138112
islet of Langerhans92581
liver781451201
bone tissue58
left cardiac atrium401
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM12878541
EndoC_BH113332
H1-hESC8
primary cell
monocyte3828
CD8-positive, alpha-beta T cell332
pancreatic alpha cell710131
pancreatic beta cell710101
pancreatic endocrine cell23
in vitro differentiated cells
cardiomyocytes347
adipocyte4141
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
hepatocyte14
stem cell
hESC21
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