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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1227total RNA-seq
  • 868ChIP-seq
  • 187DNase-seq
  • 131ATAC-seq
  • 102single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 5GRO-seq
  • 4FAIRE-seq
Assay category
  • 1347Transcription
  • 868DNA binding
  • 322DNA accessibility
  • 16DNA methylation
Target of assay
  • 745histone modification
  • 744histone
  • 378narrow histone mark
  • 365broad histone mark
  • 113transcription factor
  • 35RNA binding protein
  • 10control
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 531February, 2021
  • 302May, 2021
  • 260May, 2020
  • 254August, 2017
  • 179June, 2019
  • 163July, 2018
  • 150October, 2019
  • 85May, 2019
  • 77July, 2019
  • 72September, 2018
  • 64April, 2019
  • 64November, 2017
  • 49April, 2018
  • 40May, 2024
  • 40October, 2018
  • 37August, 2021
  • 31February, 2018
  • 31November, 2019
  • 21November, 2018
  • 20May, 2022
  • 19December, 2017
  • 14October, 2017
  • 12March, 2020
  • 8January, 2018
  • 7August, 2020
  • 6January, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3December, 2018
  • 3June, 2018
  • 3September, 2020
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2552Homo sapiens
Biosample type
  • 1701tissue
  • 528primary cell
  • 211in vitro differentiated cells
  • 117cell line
  • 1stem cell
Organ
  • 602pancreas
  • 565connective tissue
  • 425adipose tissue
  • 247liver
  • 237epithelium
  • 211heart
  • 199brain
  • 120vasculature
  • 119blood vessel
  • 107kidney
  • 87limb
  • 79artery
  • 59musculature of body
  • 58bone element
  • 31nerve
  • 19embryo
  • 18ureter
  • 16spleen
  • 3blood
  • 3bodily fluid
  • 3eye
  • 1pericardium
  • 1pituitary gland
  • 1vein
Project
  • 2366AMP
  • 182T1D
  • 10HPAP
Genome assembly (visualization)
  • 2413hg19
  • 2384GRCh38
  • 5hg18
Lab
  • 2253AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 12Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 2Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 138inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2558 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
GRO-seq
FAIRE-seq
tissue
adipose tissue381122
islet of Langerhans260291361
liver146462201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes593
adipocyte4473
neural progenitor cell713
pancreatic endoderm4101
embryonic stem cell225
cell line
smooth muscle cell of the coronary artery522
EndoC_BH13111
HepG216
GM1287821
early embryonic cell1
stem cell
hESC1
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