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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 665ChIP-seq
  • 193total RNA-seq
  • 89single cell RNA-seq
  • 63ATAC-seq
  • 47DNase-seq
  • 11small RNA-seq
  • 5Hi-C
  • 4FAIRE-seq
  • 1WGBS
Assay category
  • 665DNA binding
  • 293Transcription
  • 114DNA accessibility
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 404transcription factor
  • 246histone
  • 246histone modification
  • 148narrow histone mark
  • 98broad histone mark
  • 88recombinant protein
  • 74RNA binding protein
  • 32chromatin remodeller
  • 13control
  • 2other context
  • 2other post-translational modification
Date released
  • 270November, 2017
  • 109May, 2021
  • 103October, 2019
  • 86May, 2020
  • 61November, 2018
  • 60June, 2019
  • 55December, 2017
  • 49August, 2017
  • 45July, 2018
  • 44July, 2019
  • 39April, 2018
  • 35August, 2021
  • 27December, 2018
  • 27February, 2021
  • 20January, 2019
  • 13March, 2020
  • 12May, 2019
  • 8October, 2018
  • 5December, 2019
  • 3August, 2018
  • 3February, 2023
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1October, 2017
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1078Homo sapiens
Biosample type
  • 405cell line
  • 350primary cell
  • 206tissue
  • 115in vitro differentiated cells
  • 2stem cell
Organ
  • 385liver
  • 138epithelium
  • 120pancreas
  • 72brain
  • 52blood
  • 52bodily fluid
  • 45connective tissue
  • 38kidney
  • 37vasculature
  • 33blood vessel
  • 30heart
  • 14vein
  • 13musculature of body
  • 12adipose tissue
  • 12embryo
  • 8artery
  • 5eye
  • 4limb
  • 1pericardium
  • 1pituitary gland
Project
  • 962AMP
  • 116T1D
Genome assembly (visualization)
  • 1059hg19
  • 954GRCh38
Lab
  • 956AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 90inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1078 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
FAIRE-seq
WGBS
cell line
HepG231051
GM1287852
H1-hESC8
Panc1611
EndoC_BH1222
primary cell
monocyte46252
skeletal muscle myoblast1512
endothelial cell of umbilical vein1211
pancreatic alpha cell11
pancreatic beta cell11
tissue
liver4031
islet of Langerhans202631
heart5341
brain512
body of pancreas7
in vitro differentiated cells
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
hepatocyte14
cardiomyocytes12
adipocyte631
stem cell
hESC2
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