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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 143ChIP-seq
  • 142total RNA-seq
  • 85single cell RNA-seq
  • 58ATAC-seq
  • 25DNase-seq
  • 11small RNA-seq
  • 3FAIRE-seq
Assay category
  • 238Transcription
  • 143DNA binding
  • 86DNA accessibility
Target of assay
  • 122histone
  • 122histone modification
  • 86narrow histone mark
  • 36broad histone mark
  • 21transcription factor
  • 3RNA binding protein
Date released
  • 108May, 2021
  • 86May, 2020
  • 46October, 2019
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 31August, 2017
  • 29June, 2019
  • 25August, 2021
  • 7February, 2021
  • 5March, 2020
  • 3August, 2018
  • 2December, 2017
  • 2November, 2018
  • 1February, 2018
  • 1June, 2018
  • 1October, 2017
  • 1October, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 467Homo sapiens
Biosample type
  • 265primary cell
  • 135tissue
  • 67in vitro differentiated cells
Organ
  • 99pancreas
  • 74epithelium
  • 49brain
  • 40connective tissue
  • 17heart
  • 14kidney
  • 12adipose tissue
  • 10liver
  • 4musculature of body
  • 2artery
  • 2blood vessel
  • 2embryo
  • 2eye
  • 2vasculature
  • 1pericardium
  • 1pituitary gland
Project
  • 355AMP
  • 112T1D
Genome assembly (visualization)
  • 456hg19
  • 408GRCh38
Lab
  • 350AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 36inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

467 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
monocyte46252
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans202631
heart241
liver421
frontal cortex1211
white adipose tissue4
in vitro differentiated cells
neural progenitor cell137
cardiomyocytes12
adipocyte63
induced pluripotent stem cell9
embryonic stem cell4
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