Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 522ChIP-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 5ATAC-seq
  • 5Hi-C
  • 4single cell RNA-seq
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 522DNA binding
  • 55Transcription
  • 28DNA accessibility
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 383transcription factor
  • 124histone
  • 124histone modification
  • 88recombinant protein
  • 71RNA binding protein
  • 62broad histone mark
  • 62narrow histone mark
  • 32chromatin remodeller
  • 13control
  • 2other context
  • 2other post-translational modification
Date released
  • 270November, 2017
  • 59November, 2018
  • 57October, 2019
  • 53December, 2017
  • 31June, 2019
  • 27December, 2018
  • 20February, 2021
  • 20January, 2019
  • 18August, 2017
  • 12May, 2019
  • 10August, 2021
  • 8July, 2019
  • 8March, 2020
  • 7October, 2018
  • 5December, 2019
  • 3February, 2023
  • 1April, 2019
  • 1July, 2018
  • 1May, 2021
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 611Homo sapiens
Biosample type
  • 405cell line
  • 85primary cell
  • 71tissue
  • 48in vitro differentiated cells
  • 2stem cell
Organ
  • 375liver
  • 64epithelium
  • 52blood
  • 52bodily fluid
  • 35vasculature
  • 31blood vessel
  • 24kidney
  • 23brain
  • 21pancreas
  • 14vein
  • 13heart
  • 10embryo
  • 9musculature of body
  • 6artery
  • 5connective tissue
  • 4limb
  • 3eye
Project
  • 607AMP
  • 4T1D
Genome assembly (visualization)
  • 603hg19
  • 546GRCh38
Lab
  • 606AMP-T2D consortium
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
Audit category:
  • 54inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

611 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
WGBS
cell line
HepG231051
GM1287852
H1-hESC8
Panc1611
EndoC_BH1222
primary cell
skeletal muscle myoblast1512
endothelial cell of umbilical vein1211
skeletal muscle satellite cell7
hepatocyte5
kidney epithelial cell41
tissue
liver361
body of pancreas7
brain51
heart51
thoracic aorta6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
hepatocyte14
Posterior foregut2
cardiomyocytes (cardiac muscle cell)2
definitive endodermal cell2
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego