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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1085total RNA-seq
  • 725ChIP-seq
  • 162DNase-seq
  • 73ATAC-seq
  • 17single cell RNA-seq
  • 16WGBS
  • 7small RNA-seq
  • 5GRO-seq
  • 1FAIRE-seq
Assay category
  • 1109Transcription
  • 725DNA binding
  • 236DNA accessibility
  • 16DNA methylation
Target of assay
  • 623histone modification
  • 622histone
  • 329broad histone mark
  • 292narrow histone mark
  • 92transcription factor
  • 32RNA binding protein
  • 10control
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 524February, 2021
  • 223August, 2017
  • 194May, 2021
  • 174May, 2020
  • 150June, 2019
  • 119July, 2018
  • 104October, 2019
  • 85May, 2019
  • 72September, 2018
  • 64April, 2019
  • 64November, 2017
  • 41July, 2019
  • 40May, 2024
  • 39October, 2018
  • 31November, 2019
  • 30February, 2018
  • 20May, 2022
  • 19November, 2018
  • 17December, 2017
  • 13October, 2017
  • 12August, 2021
  • 10April, 2018
  • 8January, 2018
  • 7August, 2020
  • 7March, 2020
  • 6January, 2019
  • 5November, 2020
  • 5September, 2017
  • 3December, 2018
  • 3September, 2020
  • 2June, 2018
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 2085Homo sapiens
Biosample type
  • 1566tissue
  • 263primary cell
  • 144in vitro differentiated cells
  • 117cell line
  • 1stem cell
Organ
  • 525connective tissue
  • 503pancreas
  • 413adipose tissue
  • 237liver
  • 194heart
  • 163epithelium
  • 150brain
  • 118vasculature
  • 117blood vessel
  • 93kidney
  • 87limb
  • 77artery
  • 58bone element
  • 55musculature of body
  • 31nerve
  • 18ureter
  • 17embryo
  • 16spleen
  • 3blood
  • 3bodily fluid
  • 1eye
  • 1vein
Project
  • 2011AMP
  • 70T1D
  • 10HPAP
Genome assembly (visualization)
  • 1976GRCh38
  • 1957hg19
  • 5hg18
Lab
  • 1903AMP-T2D consortium
  • 106Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 12Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
Audit category:
  • 102inconsistent ontology term
Audit category:
  • 60missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2091 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
GRO-seq
FAIRE-seq
tissue
adipose tissue381112
islet of Langerhans25891
liver144421201
bone tissue58
left cardiac atrium401
primary cell
monocyte2838
CD8-positive, alpha-beta T cell233
pancreatic alpha cell107131
pancreatic beta cell107101
pancreatic endocrine cell23
in vitro differentiated cells
cardiomyocytes473
adipocyte441
pancreatic endoderm4101
definitive endodermal cell241
primitive gut cell241
cell line
smooth muscle cell of the coronary artery522
EndoC_BH13111
HepG216
GM1287821
early embryonic cell1
stem cell
hESC1
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