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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 963ChIP-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 963DNA binding
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • 440narrow histone mark
  • broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 289November, 2017
  • 260May, 2020
  • 239May, 2021
  • 211August, 2017
  • 202June, 2019
  • 164July, 2018
  • 155October, 2019
  • 85July, 2019
  • 80November, 2018
  • 57December, 2017
  • 55September, 2018
  • 49April, 2018
  • 39August, 2021
  • 39May, 2019
  • 30December, 2018
  • 28April, 2019
  • 28October, 2018
  • 25November, 2019
  • 23February, 2018
  • 22January, 2019
  • 20March, 2020
  • 20May, 2022
  • 20May, 2024
  • 9October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 3014bam
  • 2742bigWig
  • 1600tsv
  • 1397bed narrowPeak
  • 1240fastq
  • 800bigBed narrowPeak
  • 286bed broadPeak
  • 269bigBed broadPeak
  • 261bed bed3+
  • 251tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2740Homo sapiens
Biosample type
  • 1519tissue
  • 504cell line
  • 495primary cell
  • 222in vitro differentiated cells
  • 2stem cell
Organ
  • 592liver
  • 554connective tissue
  • 550pancreas
  • 425adipose tissue
  • 259epithelium
  • 167heart
  • 162brain
  • 116kidney
  • 112vasculature
  • 107blood vessel
  • 71artery
  • 58bone element
  • 57limb
  • 55blood
  • 55bodily fluid
  • 52musculature of body
  • 25embryo
  • 18ureter
  • 15nerve
  • 12spleen
  • 8vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2590AMP
  • 142T1D
  • 10HPAP
Genome assembly (visualization)
  • 2645hg19
  • 2539GRCh38
  • 5hg18
Lab
  • 2517AMP-T2D consortium
  • 156Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 20Patrick T. Ellinor, Broad
  • 13Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 178inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 62missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

2742 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue381122
islet of Langerhans260191361
liver147722201
bone tissue58
body of pancreas2154422
cell line
HepG253171
smooth muscle cell of the coronary artery524
GM12878541
EndoC_BH13372
H1-hESC8
primary cell
monocyte53402
pancreatic alpha cell1041312
pancreatic beta cell1041012
pancreatic acinar cell44512
pancreatic ductal cell47410
in vitro differentiated cells
cardiomyocytes593
adipocyte43513
cardiac precursors (cardiac muscle cell)19
neural progenitor cell77
pancreatic endoderm481
stem cell
hESC11
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