Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 522ChIP-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 522DNA binding
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • histone
  • 496transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 259November, 2017
  • 233May, 2020
  • 191June, 2019
  • 187May, 2021
  • 164July, 2018
  • 150August, 2017
  • 85July, 2019
  • 80November, 2018
  • 49April, 2018
  • 42December, 2017
  • 40September, 2018
  • 38October, 2019
  • 30December, 2018
  • 28August, 2021
  • 21November, 2019
  • 20May, 2022
  • 19January, 2019
  • 17March, 2020
  • 17October, 2018
  • 15February, 2018
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5April, 2019
  • 5December, 2019
  • 5May, 2019
  • 5May, 2024
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 2608bam
  • 2301bigWig
  • 1600tsv
  • 1129fastq
  • 967bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 2301Homo sapiens
Biosample type
  • 1251tissue
  • 485cell line
  • 383primary cell
  • 181in vitro differentiated cells
  • 1stem cell
Organ
  • 540liver
  • 535connective tissue
  • 481pancreas
  • 423adipose tissue
  • 211epithelium
  • 127heart
  • 101kidney
  • 87vasculature
  • 83blood vessel
  • 65artery
  • 58bone element
  • 56brain
  • 54blood
  • 54bodily fluid
  • 43limb
  • 41musculature of body
  • 18embryo
  • 18ureter
  • 10spleen
  • 7nerve
  • 5eye
  • 3vein
  • 1pericardium
Project
  • 2193AMP
  • 98T1D
  • 10HPAP
Genome assembly (visualization)
  • 2235hg19
  • 2130GRCh38
  • 5hg18
Lab
  • 2143AMP-T2D consortium
  • 106Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 11Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Patrick T. Ellinor, Broad
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 159inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 34missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

2301 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue38122
islet of Langerhans26071361
liver147382201
bone tissue58
heart41811
cell line
HepG253081
smooth muscle cell of the coronary artery524
GM12878531
EndoC_BH13312
H1-hESC8
primary cell
monocyte532
pancreatic alpha cell101312
pancreatic beta cell101012
pancreatic acinar cell4512
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes593
adipocyte42213
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell26
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego