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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 950ChIP-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 950DNA binding
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 304November, 2017
  • 251May, 2021
  • 233May, 2020
  • 212August, 2017
  • 199June, 2019
  • 164July, 2018
  • 90October, 2019
  • 85July, 2019
  • 80November, 2018
  • 63May, 2019
  • 57December, 2017
  • 57September, 2018
  • 49April, 2018
  • 42April, 2019
  • 36August, 2021
  • 36October, 2018
  • 30December, 2018
  • 27November, 2019
  • 25May, 2024
  • 23February, 2018
  • 23January, 2019
  • 20May, 2022
  • 17March, 2020
  • 13October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 2987bam
  • 2729bigWig
  • 1600tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 260bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 2725Homo sapiens
Biosample type
  • 1504tissue
  • 503cell line
  • 501primary cell
  • 219in vitro differentiated cells
  • 2stem cell
Organ
  • 570liver
  • 554pancreas
  • 552connective tissue
  • 423adipose tissue
  • 253epithelium
  • 184heart
  • 130vasculature
  • 126blood vessel
  • 116brain
  • 116kidney
  • 79artery
  • 77limb
  • 58bone element
  • 57musculature of body
  • 54blood
  • 54bodily fluid
  • 23nerve
  • 22embryo
  • 18ureter
  • 14spleen
  • 10vein
  • 5eye
  • 1pericardium
Project
  • 2577AMP
  • 142T1D
  • 10HPAP
Genome assembly (visualization)
  • 2607hg19
  • 2522GRCh38
  • 5hg18
Lab
  • 2486AMP-T2D consortium
  • 170Kyle Gaulton, UCSD
  • 25Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 12Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 173inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 58missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

2729 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue38122
islet of Langerhans260171361
liver147482201
bone tissue58
body of pancreas2204422
cell line
HepG253171
smooth muscle cell of the coronary artery524
GM12878531
EndoC_BH13372
H1-hESC8
primary cell
monocyte53442
pancreatic alpha cell1031312
pancreatic beta cell1031012
CD8-positive, alpha-beta T cell4232
pancreatic acinar cell44512
in vitro differentiated cells
cardiomyocytes593
adipocyte43513
cardiac precursors (cardiac muscle cell)19
neural progenitor cell76
pancreatic endoderm471
stem cell
hESC11
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