Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 894ChIP-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 894DNA binding
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 546February, 2021
  • 299May, 2021
  • 260May, 2020
  • 225August, 2017
  • 206June, 2019
  • 200October, 2019
  • 164July, 2018
  • 94November, 2017
  • 92May, 2019
  • 85July, 2019
  • 72September, 2018
  • 60April, 2019
  • 49April, 2018
  • 36August, 2021
  • 35May, 2024
  • 32October, 2018
  • 31February, 2018
  • 30December, 2017
  • 30November, 2019
  • 20March, 2020
  • 20May, 2022
  • 17November, 2018
  • 14October, 2017
  • 12January, 2019
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
  • 2December, 2018
Available data
  • 2907bam
  • 2673bigWig
  • 1600tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 254bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 2667Homo sapiens
Biosample type
  • 1679tissue
  • 603primary cell
  • 222in vitro differentiated cells
  • 166cell line
  • 3stem cell
Organ
  • 604pancreas
  • 530connective tissue
  • 408adipose tissue
  • 292epithelium
  • 289liver
  • 219brain
  • 207heart
  • 146vasculature
  • 142blood vessel
  • 122kidney
  • 91limb
  • 80artery
  • 68musculature of body
  • 58bone element
  • 31nerve
  • 26embryo
  • 18ureter
  • 15vein
  • 10spleen
  • 5eye
  • 4blood
  • 4bodily fluid
  • 1pericardium
  • 1pituitary gland
Project
  • 2477AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2529hg19
  • 2482GRCh38
  • 5hg18
Lab
  • 2379AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 178inconsistent ontology term
Audit category:
  • 52missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

2673 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue381122
islet of Langerhans260221361
liver147452201
bone tissue58
heart4121811
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes59
adipocyte42513
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm491
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133122
HepG25341
H1-hESC8
Panc1611
stem cell
hESC21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego