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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
3
Hi-C
Assay category
6
Transcription
3
3D chromatin structure
Date released
6
February, 2021
3
October, 2022
November, 2018
September, 2018
Available data
3233
bam
3017
bigWig
1698
bed narrowPeak
1574
tsv
1197
fastq
955
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
6
csv
5
hdf5
4
tar
3
cool
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
6
tissue
3
primary cell
Organ
5
kidney
3
epithelium
3
pancreas
1
liver
Project
6
AMP
3
HPAP
Genome assembly (visualization)
3
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
8
audit script error
files.file_type!
ibed
month_released!
November, 2018
September, 2018
BIOSAMPLE
ASSAY
9 results
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single cell RNA-seq
Hi-C
tissue
kidney
5
liver
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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