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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
1
ChIP-seq
Assay category
6
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
3
October, 2022
2
July, 2019
2
October, 2019
Available data
3212
bam
3019
bigWig
1688
bed narrowPeak
1532
tsv
1355
fastq
963
bigBed narrowPeak
392
tagAlign
309
bed broadPeak
272
bigBed broadPeak
262
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
5
primary cell
1
cell line
1
tissue
Organ
5
epithelium
4
brain
4
pancreas
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
4
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bed bedMethyl
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
7 results
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Clear Filters
Hi-C
ChIP-seq
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
Panc1
1
tissue
medial globus pallidus
1
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