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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
1
whole genome sequencing assay
Assay category
3
3D chromatin structure
1
DNA sequencing
Date released
3
October, 2022
1
August, 2021
Available data
3094
bam
2895
bigWig
1714
bed narrowPeak
1411
tsv
1341
fastq
1036
bigBed narrowPeak
334
tagAlign
318
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Organ
3
epithelium
3
pancreas
1
liver
Project
3
HPAP
1
AMP
Genome assembly (visualization)
3
hg19
Lab
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
October, 2017
BIOSAMPLE
ASSAY
4 results
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Hi-C
whole genome sequencing assay
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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