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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
11
ATAC-seq
8
WGBS
4
RRBS
2
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
128
Transcription
38
DNA accessibility
12
DNA methylation
2
DNA binding
1
3D chromatin structure
Target of assay
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Date released
76
February, 2023
45
February, 2021
41
September, 2020
7
August, 2020
6
August, 2017
January, 2018
2
October, 2017
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
September, 2018
Available data
3047
bigWig
bam
1725
bed narrowPeak
1590
tsv
1185
fastq
958
bigBed narrowPeak
330
tagAlign
286
bed broadPeak
249
bigBed broadPeak
228
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
182
Homo sapiens
Biosample type
172
primary cell
7
tissue
2
cell line
1
in vitro differentiated cells
Organ
70
pancreas
69
epithelium
4
liver
2
adipose tissue
2
connective tissue
2
musculature of body
1
brain
Project
169
HPAP
13
AMP
Genome assembly (visualization)
11
GRCh38
5
hg19
Lab
169
Klaus Kaestner, Upenn
12
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
January, 2018
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
182 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
RRBS
ChIP-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
pancreatic cell
2
+ See 1 more…
tissue
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
brain
1
islet of Langerhans
1
cell line
HepG2
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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