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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92total RNA-seq
  • 36single cell RNA-seq
  • 27snATAC-seq
  • 11ATAC-seq
  • 8WGBS
  • 5GRO-seq
  • 4RRBS
  • 2ChIP-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 128Transcription
  • 38DNA accessibility
  • 12DNA methylation
  • 2DNA binding
  • 13D chromatin structure
Target of assay
  • 1broad histone mark
  • 1histone
  • 1histone modification
  • 1transcription factor
Date released
  • 76February, 2023
  • 45February, 2021
  • 41September, 2020
  • 7August, 2020
  • 6August, 2017
  • 5January, 2018
  • 2October, 2017
  • 1August, 2018
  • 1December, 2018
  • 1November, 2017
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 187Homo sapiens
Biosample type
  • 172primary cell
  • 7tissue
  • 5in vitro differentiated cells
  • 2cell line
  • 1stem cell
Organ
  • 70pancreas
  • 69epithelium
  • 4liver
  • 2adipose tissue
  • 2connective tissue
  • 2musculature of body
  • 1brain
  • 1embryo
Project
  • 169HPAP
  • 18AMP
Genome assembly (visualization)
  • 11GRCh38
  • 5hg18
  • 5hg19
Lab
  • 169Klaus Kaestner, Upenn
  • 17AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
BIOSAMPLE
ASSAY

187 results

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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
GRO-seq
RRBS
ChIP-seq
Hi-C
pCHi-C
primary cell
Langerhans cell3427
pancreatic alpha cell4276
exocrine cell39
pancreatic beta cell113
pancreatic cell2
tissue
liver11
skeletal muscle tissue2
adipose tissue1
brain1
islet of Langerhans1
in vitro differentiated cells
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
white fat cell1
cell line
HepG211
stem cell
hESC1
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