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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
126
ChIP-seq
75
single cell RNA-seq
56
ATAC-seq
10
WGBS
2
FAIRE-seq
2
RRBS
1
DNase-seq
Assay category
253
Transcription
126
DNA binding
59
DNA accessibility
12
DNA methylation
Target of assay
88
histone
88
histone modification
46
broad histone mark
42
narrow histone mark
28
control
10
transcription factor
6
RNA binding protein
Date released
151
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
9
September, 2017
7
August, 2020
6
February, 2021
5
November, 2018
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
746
bam
691
bigWig
473
fastq
426
tsv
274
bed narrowPeak
138
bigBed narrowPeak
80
zippedFastqFolder
67
bed broadPeak
bed bed3+
40
bigBed broadPeak
34
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
9
bedpe bed3+
9
hic
7
txt
3
cool
1
bedpe
hdf5
Organism
443
Homo sapiens
Biosample type
258
primary cell
192
tissue
Organ
459
liver
448
pancreas
257
epithelium
89
connective tissue
60
blood
60
bodily fluid
39
adipose tissue
24
embryo
23
spleen
19
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
381
AMP
69
HPAP
Genome assembly (visualization)
342
hg19
334
GRCh38
Lab
355
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
hdf5
BIOSAMPLE
ASSAY
450 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
FAIRE-seq
RRBS
DNase-seq
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
97
7
6
20
1
1
body of pancreas
33
4
2
pancreas
16
2
1
skeletal muscle tissue
2
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