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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
431
transcription factor
157
histone modification
156
histone
142
control
84
broad histone mark
83
RNA binding protein
82
recombinant protein
71
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
35
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
2
December, 2017
2
December, 2018
Available data
98
bigWig
97
bed narrowPeak
95
bam
86
bigBed narrowPeak
85
fastq
7
bed broadPeak
7
bigBed broadPeak
bed bed3+
1
tar
Organism
83
Homo sapiens
Biosample type
63
cell line
13
tissue
4
in vitro differentiated cells
3
primary cell
Organ
57
liver
10
blood
10
bodily fluid
9
connective tissue
6
pancreas
5
adipose tissue
epithelium
3
brain
2
vasculature
1
blood vessel
Project
83
AMP
Genome assembly (visualization)
80
hg19
76
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bed bed3+
tsv
organ_slims!
epithelium
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
tissue
body of pancreas
5
omental fat pad
3
subcutaneous adipose tissue
2
liver
1
pancreas
1
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in vitro differentiated cells
adipocyte
4
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
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