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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
5
total RNA-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
449
DNA binding
5
Transcription
3
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
325
transcription factor
82
recombinant protein
76
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
November, 2018
25
August, 2017
5
January, 2019
1
December, 2018
Available data
681
bam
621
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
459
Homo sapiens
Biosample type
367
cell line
77
tissue
15
in vitro differentiated cells
Organ
459
liver
448
pancreas
257
epithelium
89
connective tissue
60
blood
60
bodily fluid
39
adipose tissue
24
embryo
23
spleen
19
brain
6
vasculature
blood vessel
2
musculature of body
Project
459
AMP
Genome assembly (visualization)
384
hg19
337
GRCh38
Lab
459
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
blood vessel
intestine
BIOSAMPLE
ASSAY
459 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
tissue
liver
64
1
1
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
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