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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 807ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 11WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 807DNA binding
  • 371Transcription
  • 93DNA accessibility
  • 15DNA methylation
  • 13D chromatin structure
Target of assay
  • 435transcription factor
  • 208histone modification
  • 207histone
  • 159control
  • 107broad histone mark
  • 99narrow histone mark
  • 87RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 254August, 2017
  • 79December, 2017
  • 79November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 39February, 2021
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 9September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1601tsv
  • 1352fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • bed bed3+
  • 161txt
  • 112zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1286Homo sapiens
Biosample type
  • 427cell line
  • 403primary cell
  • 340tissue
  • 122in vitro differentiated cells
  • 1stem cell
Organ
  • 459liver
  • 442pancreas
  • 251epithelium
  • 89connective tissue
  • 60blood
  • 60bodily fluid
  • 39adipose tissue
  • 24embryo
  • 23spleen
  • 19brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1130AMP
  • 163HPAP
Genome assembly (visualization)
  • 949hg19
  • 892GRCh38
  • 5hg18
Lab
  • 1104AMP-T2D consortium
  • 163Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 75missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

1293 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell13521213
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
pancreatic acinar cell8495
pancreatic endocrine cell23
skeletal muscle myoblast1511
pancreatic delta cell11
pancreatic cell9
pancreatic polypeptide-secreting cell9
mesenchymal cell6
astrocyte of the cerebellum3
brain microvascular endothelial cell3
choroid plexus epithelial cell3
pancreatic stellate cell3
co-expressing pancreatic endocrine cell2
endothelial cell2
enteroendocrine cell2
mast cell2
pancreatic epsilon cell2
unclassified exocrine cell2
unclassified pancreatic endocrine cell2
tissue
islet of Langerhans79762011
liver6411
body of pancreas3342
spleen2012
pancreas1621
subcutaneous adipose tissue121
omental fat pad111
right lobe of liver101
brain9
white adipose tissue8
adipose tissue23
skeletal muscle tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
adipocyte461
pancreatic endoderm1541
hepatocyte15
definitive endodermal cell521
primitive gut cell521
embryonic stem cell32
endocrine cell32
posterior foregut32
Hepatic endoderm4
Posterior foregut21
islet precursor cell1
white fat cell1
stem cell
hESC1
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