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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
141
ChIP-seq
75
single cell RNA-seq
33
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
247
Transcription
141
DNA binding
38
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
24
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
19
September, 2020
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
654
bam
618
bigWig
436
fastq
417
tsv
191
bed narrowPeak
86
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
429
Homo sapiens
Biosample type
253
primary cell
183
tissue
Organ
465
liver
436
pancreas
252
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
367
AMP
69
HPAP
Genome assembly (visualization)
350
GRCh38
338
hg19
Lab
365
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
lab.title!
Kyle Gaulton, UCSD
month_released!
September, 2017
BIOSAMPLE
ASSAY
436 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
12
11
6
pancreatic beta cell
21
13
12
8
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
4
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
91
22
6
2
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
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