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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 12DNase-seq
  • 8WGBS
  • 5GRO-seq
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 8DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 281August, 2017
  • 94December, 2017
  • 81November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1338Homo sapiens
Biosample type
  • 426cell line
  • 408primary cell
  • 366tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 467pancreas
  • 463liver
  • 257epithelium
  • 99connective tissue
  • 60blood
  • 60bodily fluid
  • 42adipose tissue
  • 27embryo
  • 22spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
Project
  • 1176AMP
  • 169HPAP
Genome assembly (visualization)
  • 1004hg19
  • 942GRCh38
  • 5hg18
Lab
  • 1150AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bedMethyl
BIOSAMPLE
ASSAY

1345 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
GRO-seq
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG236051
GM1287860
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
liver6721
body of pancreas3342
spleen2011
pancreas161
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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