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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 237total RNA-seq
  • 219ChIP-seq
  • 134single cell RNA-seq
  • 27snATAC-seq
  • 17WGBS
  • 13ATAC-seq
  • 5GRO-seq
  • 4RRBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 371Transcription
  • 219DNA binding
  • 40DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 168control
  • 32transcription factor
  • 19histone
  • 19histone modification
  • 12narrow histone mark
  • 7broad histone mark
  • 3RNA binding protein
  • 1recombinant protein
Date released
  • 166August, 2017
  • 76February, 2023
  • 69November, 2017
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 29October, 2018
  • 27September, 2018
  • 23February, 2018
  • 22December, 2017
  • 15November, 2018
  • 9January, 2019
  • 7August, 2020
  • 6May, 2022
  • 6September, 2017
  • 5December, 2018
  • 5January, 2018
  • 5October, 2017
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 657Homo sapiens
Biosample type
  • 320primary cell
  • 208tissue
  • 80cell line
  • 48in vitro differentiated cells
  • 2stem cell
Organ
  • 326pancreas
  • 180epithelium
  • 97liver
  • 49connective tissue
  • 35adipose tissue
  • 13embryo
  • 10spleen
  • 7brain
  • 6blood
  • 6bodily fluid
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
Project
  • 489AMP
  • 169HPAP
Genome assembly (visualization)
  • 312hg19
  • 305GRCh38
  • 5hg18
Lab
  • 481AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 9inconsistent ontology term
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

658 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
GRO-seq
RRBS
Hi-C
pCHi-C
primary cell
pancreatic alpha cell5261267
Langerhans cell3427
pancreatic beta cell216123
exocrine cell39
pancreatic acinar cell49
tissue
islet of Langerhans971662
liver1711
white adipose tissue12
body of pancreas82
spleen82
cell line
HepG256711
GM128786
in vitro differentiated cells
adipocyte11
pancreatic endoderm461
definitive endodermal cell221
primitive gut cell221
embryonic stem cell21
stem cell
hESC11
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