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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
Assay category
69
DNA binding
Target of assay
390
transcription factor
180
histone modification
179
histone
140
control
89
broad histone mark
89
narrow histone mark
82
recombinant protein
69
RNA binding protein
31
chromatin remodeller
4
other context
4
other post-translational modification
Date released
30
November, 2017
21
November, 2018
October, 2018
6
August, 2017
6
January, 2019
4
December, 2017
2
December, 2018
Available data
95
bigWig
94
bed narrowPeak
92
bam
82
bigBed narrowPeak
78
fastq
9
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
tar
Organism
69
Homo sapiens
Biosample type
59
cell line
6
in vitro differentiated cells
4
tissue
Organ
53
liver
10
blood
10
bodily fluid
4
connective tissue
2
epithelium
2
pancreas
Project
69
AMP
Genome assembly (visualization)
66
hg19
64
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
October, 2018
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
cell line
HepG2
49
GM12878
10
in vitro differentiated cells
adipocyte
4
hepatocyte
2
tissue
islet of Langerhans
2
liver
1
right lobe of liver
1
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