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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 780ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 780DNA binding
  • 371Transcription
  • 91DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 405transcription factor
  • 202histone modification
  • 201histone
  • 168control
  • 104broad histone mark
  • 96narrow histone mark
  • 82recombinant protein
  • 80RNA binding protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 272August, 2017
  • 260November, 2017
  • 94December, 2017
  • 79November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1263Homo sapiens
Biosample type
  • 389primary cell
  • 369cell line
  • 368tissue
  • 140in vitro differentiated cells
  • 4stem cell
Organ
  • 469pancreas
  • 404liver
  • 253epithelium
  • 99connective tissue
  • 60blood
  • 60bodily fluid
  • 43adipose tissue
  • 27embryo
  • 23spleen
  • 13brain
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
Project
  • 1101AMP
  • 169HPAP
Genome assembly (visualization)
  • 920hg19
  • 879GRCh38
  • 5hg18
Lab
  • 1075AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

1270 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
DNase-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG2302511
GM1287860
tissue
islet of Langerhans289762011
liver6711
body of pancreas3342
spleen2012
pancreas1621
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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