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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 369ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 37ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 5GRO-seq
  • 4RRBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 371Transcription
  • 369DNA binding
  • 64DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 168control
  • 138histone modification
  • 137histone
  • 73narrow histone mark
  • 63broad histone mark
  • 63transcription factor
  • 8RNA binding protein
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 246August, 2017
  • 76February, 2023
  • 69November, 2017
  • 59September, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 44December, 2017
  • 41September, 2020
  • 39February, 2018
  • 29October, 2018
  • 24May, 2022
  • 15November, 2018
  • 11October, 2017
  • 9January, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1601tsv
  • 1358fastq
  • bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 274bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 831Homo sapiens
Biosample type
  • 366primary cell
  • 256tissue
  • 126in vitro differentiated cells
  • 80cell line
  • 4stem cell
Organ
  • 406pancreas
  • 217epithelium
  • 109liver
  • 92connective tissue
  • 36adipose tissue
  • 27embryo
  • 11spleen
  • 7brain
  • 6blood
  • 6bodily fluid
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
Project
  • 663AMP
  • 169HPAP
Genome assembly (visualization)
  • 486hg19
  • 461GRCh38
  • 5hg18
Lab
  • 637AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

832 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
RRBS
Hi-C
pCHi-C
primary cell
pancreatic alpha cell13521276
Langerhans cell3427
pancreatic beta cell1321123
exocrine cell39
pancreatic ductal cell1349
tissue
islet of Langerhans2897620
liver2911
body of pancreas842
white adipose tissue12
spleen812
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
cell line
HepG267511
GM128786
stem cell
hESC31
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