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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 158ChIP-seq
  • 98total RNA-seq
  • 36single cell RNA-seq
  • 27snATAC-seq
  • 19ATAC-seq
  • 8WGBS
  • 4RRBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 158DNA binding
  • 134Transcription
  • 46DNA accessibility
  • 12DNA methylation
  • 13D chromatin structure
Target of assay
  • 151control
  • 5transcription factor
  • 2RNA binding protein
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
  • 1recombinant protein
Date released
  • 76February, 2023
  • 47November, 2017
  • 45February, 2021
  • 38September, 2020
  • 36August, 2017
  • 27October, 2018
  • 24May, 2022
  • 22December, 2017
  • 8February, 2018
  • 8November, 2018
  • 6September, 2017
  • 5December, 2018
  • 4January, 2019
  • 3October, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 3392bam
  • bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 351Homo sapiens
Biosample type
  • 174primary cell
  • 98tissue
  • 55cell line
  • 24in vitro differentiated cells
  • 1stem cell
Organ
  • 114pancreas
  • 74epithelium
  • 72liver
  • 27connective tissue
  • 21adipose tissue
  • 8embryo
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 3brain
  • 2musculature of body
Project
  • 193AMP
  • 159HPAP
Genome assembly (visualization)
  • 31hg19
  • 9GRCh38
Lab
  • 168AMP-T2D consortium
  • 159Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

352 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
RRBS
Hi-C
pCHi-C
primary cell
Langerhans cell3427
pancreatic alpha cell6426
exocrine cell39
pancreatic beta cell611
pancreatic cell2
tissue
islet of Langerhans7619
liver1711
subcutaneous adipose tissue10
body of pancreas8
omental fat pad8
cell line
HepG2481
GM128786
in vitro differentiated cells
adipocyte6
pancreatic endoderm6
Hepatic endoderm2
definitive endodermal cell2
primitive gut cell2
stem cell
hESC1
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