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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
147
ChIP-seq
75
single cell RNA-seq
38
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
247
Transcription
147
DNA binding
43
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
665
bam
623
bigWig
447
fastq
417
tsv
196
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
cool
1
bedpe
1
hdf5
Organism
440
Homo sapiens
Biosample type
258
primary cell
189
tissue
Organ
465
liver
447
pancreas
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
378
AMP
69
HPAP
Genome assembly (visualization)
357
GRCh38
345
hg19
Lab
376
AMP-T2D consortium
69
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
cool
month_released!
May, 2022
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
447 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
91
28
6
2
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
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