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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
433
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
433
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
narrow histone mark
2
other context
2
other post-translational modification
Date released
308
November, 2017
56
December, 2017
53
November, 2018
23
August, 2017
5
January, 2019
1
December, 2018
Available data
465
bam
446
fastq
427
bigWig
390
bed narrowPeak
344
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
30
tsv
23
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
csv
1
hdf5
1
vcf
Organism
446
Homo sapiens
Biosample type
360
cell line
76
tissue
10
in vitro differentiated cells
Organ
446
liver
423
pancreas
229
epithelium
88
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
22
spleen
19
embryo
17
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
446
AMP
Genome assembly (visualization)
371
hg19
325
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
files.file_type!
csv
month_released!
May, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
446 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
353
5
1
1
tissue
liver
62
2
1
1
right lobe of liver
8
1
1
in vitro differentiated cells
hepatocyte
10
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