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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
5
WGBS
3
ATAC-seq
3
DNase-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
110
DNA binding
6
DNA accessibility
5
DNA methylation
3
Transcription
Target of assay
45
transcription factor
33
control
32
histone
32
histone modification
16
broad histone mark
15
narrow histone mark
9
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
72
August, 2017
23
October, 2018
10
November, 2018
7
December, 2018
7
January, 2019
2
July, 2018
2
October, 2017
1
April, 2018
1
August, 2018
Available data
617
bam
586
bigWig
479
tsv
125
fastq
89
bed narrowPeak
41
bigBed narrowPeak
28
bed bed3+
22
tagAlign
11
bed broadPeak
10
bigBed broadPeak
6
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
1
bedpe bed3+
hdf5
Organism
125
Homo sapiens
Biosample type
67
tissue
55
in vitro differentiated cells
3
primary cell
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
125
AMP
Genome assembly (visualization)
91
GRCh38
87
hg19
Lab
125
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
hdf5
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
spleen
20
2
1
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
in vitro differentiated cells
adipocyte
53
1
white fat cell
1
primary cell
pancreatic stellate cell
3
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