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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
5
DNase-seq
5
WGBS
5
total RNA-seq
3
ATAC-seq
3
single cell RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
530
DNA binding
8
DNA accessibility
8
Transcription
6
DNA methylation
1
3D chromatin structure
Target of assay
366
transcription factor
101
control
82
recombinant protein
66
RNA binding protein
60
histone modification
59
histone
31
broad histone mark
27
narrow histone mark
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
303
November, 2017
100
August, 2017
63
December, 2017
54
November, 2018
23
October, 2018
5
January, 2019
2
July, 2018
1
April, 2018
1
August, 2018
1
December, 2018
1
October, 2017
Available data
1273
bam
1191
bigWig
652
tsv
566
fastq
515
bed narrowPeak
385
bigBed narrowPeak
tagAlign
72
bed broadPeak
71
bigBed broadPeak
39
bed bed3+
7
bed bed3
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bedgraph
3
bedpe bed3+
3
tar
2
hdf5
2
hic
1
csv
1
vcf
Organism
554
Homo sapiens
Biosample type
355
cell line
126
tissue
70
in vitro differentiated cells
3
primary cell
Organ
464
pancreas
453
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
13
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
554
AMP
Genome assembly (visualization)
451
hg19
409
GRCh38
Lab
554
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
30
missing controlled_by
Audit category:
22
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
zippedFastqFolder
BIOSAMPLE
ASSAY
554 results
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ChIP-seq
DNase-seq
WGBS
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
348
1
5
1
tissue
liver
67
2
1
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
right lobe of liver
10
1
1
white adipose tissue
12
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in vitro differentiated cells
adipocyte
53
1
hepatocyte
15
white fat cell
1
primary cell
pancreatic stellate cell
3
See all biosamples
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