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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
147
ChIP-seq
75
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
1
Hi-C
Assay category
253
Transcription
147
DNA binding
61
DNA accessibility
10
DNA methylation
1
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
465
Homo sapiens
Biosample type
258
primary cell
213
tissue
1
cell line
Organ
472
pancreas
466
liver
259
epithelium
102
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
brain
24
spleen
8
vasculature
5
blood vessel
2
musculature of body
Project
403
AMP
69
HPAP
Genome assembly (visualization)
364
hg19
358
GRCh38
Lab
377
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
files.file_type!
ibed
organ_slims!
pericardium
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
Hi-C
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
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tissue
islet of Langerhans
97
28
6
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
cell line
Panc1
1
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