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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
14
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
12
transcription factor
1
control
1
histone
1
histone modification
1
narrow histone mark
Date released
October, 2018
18
August, 2017
1
August, 2018
1
November, 2018
1
October, 2017
Available data
420
bigWig
419
bam
401
tsv
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
0
hdf5
Organism
21
Homo sapiens
Biosample type
20
tissue
1
in vitro differentiated cells
Organ
466
liver
435
pancreas
epithelium
79
connective tissue
60
blood
60
bodily fluid
27
embryo
24
brain
24
spleen
21
adipose tissue
8
vasculature
5
blood vessel
2
musculature of body
Project
21
AMP
Genome assembly (visualization)
18
GRCh38
16
hg19
Lab
21
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
white adipose tissue
12
adipose tissue
2
3
omental fat pad
1
1
subcutaneous adipose tissue
1
in vitro differentiated cells
white fat cell
1
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