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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
Assay category
88
DNA binding
Target of assay
453
transcription factor
229
histone modification
228
histone
170
control
118
broad histone mark
109
narrow histone mark
88
RNA binding protein
82
recombinant protein
36
chromatin remodeller
5
other context
5
other post-translational modification
Date released
36
November, 2017
21
November, 2018
11
October, 2018
8
August, 2017
6
January, 2019
4
December, 2017
2
December, 2018
Available data
102
bigWig
101
bed narrowPeak
99
bam
89
bigBed narrowPeak
88
fastq
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
1
tar
0
hic
0
tsv
Organism
88
Homo sapiens
Biosample type
63
cell line
15
tissue
6
in vitro differentiated cells
4
primary cell
Organ
57
liver
10
blood
10
bodily fluid
9
connective tissue
8
pancreas
5
adipose tissue
4
epithelium
3
brain
2
vasculature
blood vessel
Project
88
AMP
Genome assembly (visualization)
85
hg19
81
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
liver
1
+ See 2 more…
in vitro differentiated cells
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
choroid plexus epithelial cell
1
See all biosamples
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