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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
72
ChIP-seq
65
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
146
Transcription
72
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
June, 2018
Available data
316
bam
300
bigWig
256
fastq
155
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
0
ibed
Organism
256
Homo sapiens
Biosample type
237
primary cell
19
in vitro differentiated cells
Organ
470
pancreas
465
liver
256
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
187
AMP
69
HPAP
Genome assembly (visualization)
180
GRCh38
172
hg19
Lab
187
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
June, 2018
BIOSAMPLE
ASSAY
256 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
8
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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