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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
18
DNA binding
3
DNA accessibility
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
10
October, 2017
9
November, 2017
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
0
vcf
Organism
21
Homo sapiens
Biosample type
12
tissue
9
primary cell
Organ
471
pancreas
466
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
21
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
4
missing controlled_by
month_released!
April, 2019
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
brain
9
2
cerebellum (Hemisphere)
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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