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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 752ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 11DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 752DNA binding
  • 371Transcription
  • 101DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 402transcription factor
  • 192histone modification
  • 191histone
  • 153control
  • 100broad histone mark
  • 90narrow histone mark
  • 82recombinant protein
  • 76RNA binding protein
  • 35chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 266November, 2017
  • 243August, 2017
  • 94December, 2017
  • 88November, 2018
  • 76February, 2023
  • 73September, 2018
  • 58October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 9September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3286bam
  • 3068bigWig
  • 1726bed narrowPeak
  • 1600tsv
  • 1252fastq
  • 990bigBed narrowPeak
  • 397tagAlign
  • 313bed broadPeak
  • 277bigBed broadPeak
  • 261bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 1246Homo sapiens
Biosample type
  • 401primary cell
  • 376cell line
  • 361tissue
  • 110in vitro differentiated cells
  • 4stem cell
Organ
  • 457pancreas
  • 412liver
  • 253epithelium
  • 70connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 14brain
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
Project
  • 1083AMP
  • 169HPAP
Genome assembly (visualization)
  • 904hg19
  • 878GRCh38
  • 5hg18
Lab
  • 1057AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

1252 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG2309511
GM1287860
tissue
islet of Langerhans18976201
liver65121
body of pancreas33422
spleen20121
pancreas1321
in vitro differentiated cells
adipocyte221
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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