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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 729ChIP-seq
  • 228total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 11DNase-seq
  • 5GRO-seq
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 729DNA binding
  • 362Transcription
  • 101DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 402transcription factor
  • 183histone modification
  • 182histone
  • 139control
  • 94broad histone mark
  • 87narrow histone mark
  • 82RNA binding protein
  • 82recombinant protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 265November, 2017
  • 244August, 2017
  • 91December, 2017
  • 86November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 35December, 2018
  • 29January, 2019
  • 24May, 2022
  • 16October, 2017
  • 11September, 2017
  • 7August, 2020
  • 6February, 2018
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3255bam
  • 3056bigWig
  • 1723bed narrowPeak
  • 1591tsv
  • 1216fastq
  • 978bigBed narrowPeak
  • 382tagAlign
  • 270bed bed3+
  • 269bed broadPeak
  • 232bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1209Homo sapiens
Biosample type
  • 372primary cell
  • 367tissue
  • 365cell line
  • 108in vitro differentiated cells
  • 4stem cell
Organ
  • 442pancreas
  • 400liver
  • 231epithelium
  • 101connective tissue
  • 59blood
  • 59bodily fluid
  • 44adipose tissue
  • 24spleen
  • 20brain
  • 15embryo
  • 6vasculature
  • 3blood vessel
Project
  • 1047AMP
  • 169HPAP
Genome assembly (visualization)
  • 891hg19
  • 854GRCh38
  • 5hg18
Lab
  • 1021AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 86missing controlled_by
Audit category:
  • 42inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

1216 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell5212136
Langerhans cell3427
pancreatic beta cell211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans259762011
liver6412
body of pancreas33422
spleen20121
pancreas1621
cell line
HepG2299511
GM1287859
in vitro differentiated cells
adipocyte531
hepatocyte15
pancreatic endoderm911
definitive endodermal cell511
primitive gut cell511
stem cell
hESC31
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