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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 107single cell RNA-seq
  • 101total RNA-seq
  • 43ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 8DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1pCHi-C
Assay category
  • 481DNA binding
  • 208Transcription
  • 80DNA accessibility
  • 21DNA methylation
Target of assay
  • 225transcription factor
  • 161histone modification
  • 160histone
  • 92control
  • 80broad histone mark
  • 79narrow histone mark
  • 63RNA binding protein
  • 27chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 151November, 2017
  • 137August, 2017
  • 76February, 2023
  • 59December, 2017
  • 45February, 2021
  • 44April, 2018
  • 43October, 2018
  • 41September, 2020
  • 38November, 2018
  • 31December, 2018
  • 25February, 2018
  • 25July, 2018
  • 24May, 2022
  • 18January, 2019
  • 11September, 2017
  • 9October, 2017
  • 7August, 2020
  • 5January, 2018
  • 3August, 2018
  • 2June, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 2832bam
  • 2687bigWig
  • 1534bed narrowPeak
  • 1437tsv
  • 798bigBed narrowPeak
  • 796fastq
  • 387tagAlign
  • 305bed broadPeak
  • 275bigBed broadPeak
  • 259bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 795Homo sapiens
Biosample type
  • 294primary cell
  • 200cell line
  • 174tissue
  • 124in vitro differentiated cells
  • 4stem cell
Organ
  • 252pancreas
  • 203liver
  • 179epithelium
  • 69connective tissue
  • 44blood
  • 44bodily fluid
  • 23embryo
  • 18spleen
  • 17adipose tissue
  • 16brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 627AMP
  • 169HPAP
Genome assembly (visualization)
  • 528hg19
  • 474GRCh38
  • 5hg18
Lab
  • 602AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 26missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

796 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell131142106
Langerhans cell3427
pancreatic beta cell1310116
exocrine cell39
skeletal muscle myoblast141
cell line
HepG21551
GM1287844
tissue
islet of Langerhans22681911
body of pancreas31122
liver17111
spleen14121
right lobe of liver1011
in vitro differentiated cells
adipocyte51
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
primitive gut cell81
stem cell
hESC31
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