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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 721ChIP-seq
  • 237total RNA-seq
  • 98single cell RNA-seq
  • 59ATAC-seq
  • 27snATAC-seq
  • 11WGBS
  • 10DNase-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 721DNA binding
  • 335Transcription
  • 98DNA accessibility
  • 15DNA methylation
  • 13D chromatin structure
Target of assay
  • 396transcription factor
  • 173histone modification
  • 172histone
  • 148control
  • 88broad histone mark
  • 83narrow histone mark
  • 82recombinant protein
  • 54RNA binding protein
  • 16chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 302November, 2017
  • 275August, 2017
  • 76February, 2023
  • 72September, 2018
  • 64November, 2018
  • 45February, 2021
  • 42December, 2017
  • 41September, 2020
  • 39February, 2018
  • 39July, 2018
  • 39October, 2018
  • 33December, 2018
  • 24May, 2022
  • 23April, 2018
  • 18January, 2019
  • 16October, 2017
  • 11September, 2017
  • 7August, 2020
  • 3August, 2018
  • 2June, 2018
Available data
  • 3214bam
  • 3009bigWig
  • 1706bed narrowPeak
  • 1566tsv
  • 1171fastq
  • 954bigBed narrowPeak
  • 398tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 256bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1164Homo sapiens
Biosample type
  • 379cell line
  • 373primary cell
  • 330tissue
  • 89in vitro differentiated cells
Organ
  • 420pancreas
  • 403liver
  • 212epithelium
  • 92connective tissue
  • 50blood
  • 50bodily fluid
  • 40adipose tissue
  • 19brain
  • 17spleen
  • 13embryo
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1002AMP
  • 169HPAP
Genome assembly (visualization)
  • 854hg19
  • 793GRCh38
Lab
  • 977AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 76missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

1171 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2322511
GM1287850
primary cell
pancreatic alpha cell13526136
Langerhans cell3427
pancreatic beta cell1321610
exocrine cell39
pancreatic ductal cell13464
tissue
islet of Langerhans269761911
liver6611
body of pancreas13422
pancreas161
spleen13121
in vitro differentiated cells
adipocyte481
pancreatic endoderm94
definitive endodermal cell32
embryonic stem cell32
endocrine cell32
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