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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 780ChIP-seq
  • 215total RNA-seq
  • 111single cell RNA-seq
  • 38ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 6DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
Assay category
  • 780DNA binding
  • 326Transcription
  • 73DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 398transcription factor
  • 230histone modification
  • 229histone
  • 150control
  • 118broad histone mark
  • 110narrow histone mark
  • 82recombinant protein
  • 77RNA binding protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 314November, 2017
  • 285August, 2017
  • 90December, 2017
  • 76February, 2023
  • 74November, 2018
  • 73September, 2018
  • 49July, 2018
  • 45February, 2021
  • 44April, 2018
  • 40October, 2018
  • 39February, 2018
  • 24January, 2019
  • 14October, 2017
  • 11September, 2017
  • 7August, 2020
  • 6December, 2018
  • 5January, 2018
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 1March, 2019
Available data
  • 3279bam
  • 3098bigWig
  • 1729bed narrowPeak
  • 1599tsv
  • 1206fastq
  • 975bigBed narrowPeak
  • 398tagAlign
  • 316bed broadPeak
  • 279bigBed broadPeak
  • 267bed bed3+
  • 155txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1199Homo sapiens
Biosample type
  • 381cell line
  • 370primary cell
  • 311tissue
  • 140in vitro differentiated cells
  • 4stem cell
Organ
  • 447liver
  • 416pancreas
  • 240epithelium
  • 88connective tissue
  • 31adipose tissue
  • 27embryo
  • 25blood
  • 25bodily fluid
  • 21brain
  • 15spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1075AMP
  • 131HPAP
Genome assembly (visualization)
  • 919hg19
  • 880GRCh38
  • 5hg18
Lab
  • 1073AMP-T2D consortium
  • 131Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

1206 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
cell line
HepG2349511
GM1287825
primary cell
pancreatic alpha cell133711136
pancreatic beta cell13201210
Langerhans cell1227
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans28916211
liver67111
body of pancreas2232
pancreas1621
spleen132
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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