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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 724ChIP-seq
  • 200total RNA-seq
  • 108single cell RNA-seq
  • 35ATAC-seq
  • 27snATAC-seq
  • 12DNase-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 724DNA binding
  • 308Transcription
  • 76DNA accessibility
  • 10DNA methylation
  • 13D chromatin structure
Target of assay
  • 350transcription factor
  • 230histone modification
  • 229histone
  • 142control
  • 118broad histone mark
  • 110narrow histone mark
  • 82recombinant protein
  • 71RNA binding protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 285November, 2017
  • 274August, 2017
  • 90December, 2017
  • 76February, 2023
  • 73September, 2018
  • 71November, 2018
  • 42July, 2018
  • 39February, 2021
  • 33October, 2018
  • 27April, 2018
  • 25September, 2020
  • 24February, 2018
  • 22January, 2019
  • 11October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3December, 2018
  • 2June, 2018
  • 1March, 2019
Available data
  • 3183bam
  • 3010bigWig
  • 1691bed narrowPeak
  • 1553tsv
  • 1125fastq
  • 940bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 155txt
  • 151zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1118Homo sapiens
Biosample type
  • 361primary cell
  • 339cell line
  • 295tissue
  • 126in vitro differentiated cells
  • 4stem cell
Organ
  • 416liver
  • 389pancreas
  • 217epithelium
  • 75connective tissue
  • 23embryo
  • 21brain
  • 18adipose tissue
  • 16spleen
  • 15blood
  • 15bodily fluid
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 978AMP
  • 147HPAP
Genome assembly (visualization)
  • 834hg19
  • 792GRCh38
  • 5hg18
Lab
  • 976AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 82missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 100
BIOSAMPLE
ASSAY

1125 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell1337813
Langerhans cell3427
pancreatic beta cell1320810
exocrine cell39
pancreatic ductal cell13464
cell line
HepG2317511
GM1287815
tissue
islet of Langerhans28916211
liver6721
body of pancreas2022
pancreas1611
spleen1312
in vitro differentiated cells
adipocyte531
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
primitive gut cell81
stem cell
hESC31
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